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Working experiences
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April 2021 - Ongoing

Data Scientist
at Sophia Genetics

I am working as Senior Bioinformatician in the Bundle Solution Development team. Our goal is to ensure the effectiveness of genomics products under development in their initial and most critical phases. We evaluate the performance of these products and help in their further planning and design.

Skills and Experiences overview

Data Science expertise

Capture Probe Design - (Expert User)

  • RNA Capture probe design

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Genomic Variant Analysis - (Expert User)

  • Genomic coverage

  • Genomic rearrangement

  • Somatic Variant calling

  • MSI status

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RNA expression sequencing - (Expert User)​

  • Bulk total mRNA sequencing analysis: DESeq, WGCNA, GO enrichment

  • Single-cell mRNA sequencing analysis: Seurat, Monocle, Waterfall, RNA Velocity, BASiCS, WGCNA, GO enrichment.

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Machine learning - (Proficient User)

  • Support vector machine 

  • Ordinal regression, Linear regression

  • Keras 

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Coding language expertise

  • R (Expert User)

  • Matlab (Proficient User)

  • Bash (Proficient User)

  • Python (Basic User)

Full CV

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